[Bioclusters] Re: BLAST job on SGE allocation_rule $pe_slots. control_slaves FALSE. job_is_first_task FALSE. I have yet to test it myself. Juan Perin Bioinformatics Core Children's Hospital of Philadelphia. using qsub (sge) with multi-threaded applications -… qsub -pe our_paraq 8 -cwd ./myscript. If you're using mpi you have more choices for the config allocation rule ($pe_slots above) like $round_robin and $fill_upIf your job is multithreaded, you can harness the advantage of multithreading even in SGE. In SGE single job can use one or many CPUs.
How to setup a single-machine (Sun) Grid Engine installation for unit tests on Travis-CI - create_single_machine_sge.md
GitHub - grisu48/gridengine: Son of Grid engine Son of Grid engine. Contribute to grisu48/gridengine development by creating an account on GitHub. Sge_pe
Tight PVM Integration in Grid Engine - SourceForge
Slot limits and restricting number of slots per server